I left Jerry to die welp, that's another thing I did wrong I was just sacrificing all the side characters at the end to avoid putting any of the main ones in any danger and it all ended up backfiring.
I did go back and replay the last chapter and managed to keep Connor alive by saving Hank. Then I got on the boat instead of the bus which saved Kara but Alice still ended up dying
I'll probably come back to the game at some point and take the peaceful route to see how it differs.