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Originally Posted by Ithinkiloveyoutoo
YES! I did that last step and everything is back. Thank you so much! Though every file has something like ^$ in front of it and everything is sort of blurred. Is there a way to fix that aswell? 
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It sounds like whatever infected your computer has changed those files to hidden and archived files. Or the removal process you have used has. Is the symbol
~$ file name ?
Try system restore like angus suggested if that doesnt work you may have to highlight each file and right click on it and untick the hidden boc, apply and ok. You could also try a free undelete program like Norton etc.